Suppose that you want to apply advanced options to the whole project. You should select all project files and perform the operation "Get latest version" specifying advanced options for it. Below you can find a description how to do it in different IDEs. If you want to apply advanced options to some special parts of the project (to subprojects or files), find a way to select them only.
[MS VS.NET]
Select solution. Choose File\Source Control\Get latest. Mind that VS.NET has so-called "silent" analog of each SCC operation (for instance, the silent analog of 'Get latest' is 'Get latest recursive'). The difference is that it is impossible to specify log message and choose advanced options for these operations. Do not select these items, since they are not suitable for this operation. Then press the button "options".
[MS VS 2005]
It looks almost like in VS.NET but there's one difference. VS 2005 checks whether the files in the repository are newer than the files in the working copy. If the plug-in reports that local files are up-to-date, update operation will not be performed for these files, and advanced options will not be applied.
As a workaround for this problem, the "Use workaround for "Advanced Get..." dialog in VS 2005" option was added. You can also hold "Ctrl" key to invert this option when dialog opens or when you press "Refresh" button. When this option is turned on, the plug-in always reports to IDE, that files have changed. There should be no performance penalty because the plug-in internally checks which files were changed, before making the update operation.
[MS VS]
To select all files press CTRL-A in File. Then choose Project\Source Control\Get latest version. Then press the button "advanced".
[MS VB]
Choose Tools\Pushok CVS proxy\Get Latest Version. Select all files and press the button "advanced".